rs48412013 SNP Detail

Summary

• ID
  rs48412013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38702752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGTCTTC TAGTGTTAAT
  TGGCGTTCTG AAGTTGCTTT GTGAATATAA CACGTGCATG TGACCTTGGT TATGGTCACC
  TCACAGCCTC CACACAGTTA TCTCCAGTGA TTCTCCCCAC CTGCTTAATA TTCAGCAGAG
  CAATGCAAAC TGGTGTCCAG CTAAAACCAG GAGTCCTTGT TCCTCATAAA CTCTCATGGT
  Y
  TCCTTCTTAG AAGACTGTTT TGTAGCCTTA GCATCTTGTT TTTCTTGTAG TTGCTGTTAG
  GTATGACTGT GAAATATCCC TACAGTTTCA TGTGTTGGAA TCCCCGGTCC CCAACCCTGG
  GTGCAGCTTT GAGAGGTGTT TGAGCATTCA TGCTGATCTT CCACCCATGT GTCATTATTT
  GCAGTTCACA GGGTTCACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134840450	ENSMUSSNP1657884	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320721247	CHEV_3_38547525	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48412013					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38702752 () rs orientation: forward

Symbol	Name	Function Class
Rr575691	regulatory region 575691	326 bp distal