rs48411557 SNP Detail

Summary

• ID
  rs48411557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:72581293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGATGCCCT CTTCTGGGGG TGTCTGAAGA CAGCTACAGT
  GTATAAAATA AATAAATCAA TCTTTTTTTT TTTTTTAAAG GCACCAGGTT TACCCATGGT
  R
  AACTGAAGAG TGATTCATAG CTATAATCCA TGTCTGTTCT TCAGGTTTTG TATCCTTTGT
  CCTCTTGAGT ACTTCAGTGC ATATTCAATT TTTTTCATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146544737	ENSMUSSNP3936178	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48411557					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:72581293 () rs orientation: forward

Symbol	Name	Function Class
Rr593974	regulatory region 593974	288 bp distal