rs48408956 SNP Detail

Summary

• ID
  rs48408956
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:39691843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCACCCC ACACCTCACT
  TTTGTGAACC AGACAATGGC TGATAATTAC CGAGCATCTA GTGTATTCAG GTCATTTGCA
  TTGTAAGGCA TAGATCATTC TCCCAGCTAT GGGATTTGTT TGGGTCAATT AGATTGAATG
  CAAATGGCAT GCTCTCCTTC CAAGTGAGGT TATTAAAACC ATCTTGGATT ATTCTCCACT
  S
  TTACTGAAGC AAAACCCAGA GGATGCTGGG GGCTACATTT GTAATTCAAT CTTAAAATTC
  TATTGGGTAA ATGCTATCAC TATTTTAATT AAAAGATAAA ACTACAGGAT TATGTAATTT
  CTCTACAGAT ACTTTATACA CATTTTGTAT TTGTAGACTG AAGGAGGTAG GATTTGAACC
  CAGGAATTTT GAGTCAGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63483403	NES16999812	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G		G	G	G	G		G
ss324931272	CHEV_15_39659993	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48408956					SNP	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63483403	NES16999812	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:39691843 () rs orientation: forward

Symbol	Name	Function Class
Dpys	dihydropyrimidinase	Intron
Rr501538	regulatory region 501538	222 bp proximal
Rr501539	regulatory region 501539	1563 bp proximal