rs48408501 SNP Detail

Summary

• ID
  rs48408501
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:67395282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGTTTT TTGCAACCGT
  CCCAGCCCAT CACTTCCTAT CATGGTACCG ACCTCTTTTC TAACTAACAC CTCCGTGAGA
  CCTAAGTGCC TGATTAGTAT GGAAACTCTA AAGGAAATAG AACAACTCTT AAGGAAAAGA
  ACAATTTCCC TGGTTATTCC CTCATGGTGA AAAGCAGAGA GGGTTGGAAC TTGGCATCTG
  W
  AAACTGTGAA ATCCTAGGAT TCAGGTTGTG CTCACTGAAG GGATGGACTT GTGGGTCTCG
  TGCGCTGTAT TTCCCAGATT GTCGATAAGA ATTCCTGCAG AACACGGGTG TGGCATTAGG
  AACAGATCAG TTTGGAAACT GCTGTGTTTT CCTTGTCATT TGCTCTCTGT GACCCTTTGC
  CATGTCCTCT GCTCTTCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146469628	ENSMUSSNP2747352	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48408501					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:67395282 () rs orientation: forward

Symbol	Name	Function Class
Rr593794	regulatory region 593794	68 bp proximal
Rr593795	regulatory region 593795	532 bp proximal