rs48408454 SNP Detail

Summary

• ID
  rs48408454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138222630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA GTGTTTATGG TTAACACCCT
  Y
  GGGCAAGGCA GTGAGTTTGG GGATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147648601	ENSMUSSNP4034303	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321374283	CHEV_4_138051234	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48408454					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138222630 () rs orientation: forward

Symbol	Name	Function Class
Gm32549	predicted gene, 32549	1160 bp upstream
Rr602944	regulatory region 602944	1277 bp distal
Rr602945	regulatory region 602945	within coordinates
Rr602946	regulatory region 602946	320 bp proximal
Rr602947	regulatory region 602947	618 bp proximal
Rr602948	regulatory region 602948	920 bp proximal
Rr602949	regulatory region 602949	1223 bp proximal