rs48402925 SNP Detail

Summary

• ID
  rs48402925
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155597829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTCCCC ACCCCTTTAT
  GGCTATGCCC TGACTTGCAG GGCTTCAAAT ATTTATTTCT GGTGGTTTCT GTGGACAAAC
  AATACAATTT AATATTTAAG AGCATGTATT CAGGGCTGGA GAAATGACTC AATAGTTACA
  AAAGTCCAGA GCTGGTTGCC AGTGTCTACC ATGTCAACAG CTTACAACAG CCTATAACTT
  Y
  AGTGCTGAGG GATCTGGCGC CCTCTTCTGG TCTCCTGGGA CACTGGTGAC ACACACACAG
  ACACACACTA AATGTTTTTT AATTTTTAAG AACTTTTTTT TGTGGGGGGA GGGGCATCCC
  AGGCAGAGTT TCTCTGTGTA GCTCTGGCTG CCCTAAAACT TGCTCTGTAG ACCAGGCTGG
  CCTGGAACTC AGAAATCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148058430	ENSMUSSNP1630802	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320575289	CHEV_2_155581645	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48402925					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155597829 () rs orientation: forward

Symbol	Name	Function Class
Procr	protein C receptor, endothelial	438 bp downstream
Rr568116	regulatory region 568116	within coordinates
Rr568117	regulatory region 568117	14 bp proximal
Rr568118	regulatory region 568118	1051 bp proximal
Tssr21121	transcription start site region 21121	952 bp downstream
Tssr21122	transcription start site region 21122	915 bp downstream
Tssr21123	transcription start site region 21123	895 bp downstream
Tssr21124	transcription start site region 21124	841 bp downstream