rs48401898 SNP Detail

Summary

• ID
  rs48401898
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17762147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCTCATTCCA GAGAGTTTTA CTTACTGAAG TAAATGCGGT
  AATGCCAGTG TCCTCTTTAT TGTAGAAGCA TGTCTGAAAT CTAAATAGAA TTCACACACA
  C
  ACACACACAC ACATACACGG TATTATTTTA AGCTTGATTT GAAAAGAGAA TCTTTCTAAA
  TACAAGTAGC CACCAGCTAG TATATGGTTG TTTTTTATGT T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133022190	ENSMUSSNP6136610	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48401898					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17762147 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52895	predicted gene, 52895			within coordinates
Rr379001	regulatory region 379001			812 bp downstream
Rr626856	regulatory region 626856			1787 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55099	transcription start site region 55099			733 bp upstream