rs48401596 SNP Detail

Summary

• ID
  rs48401596
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155095805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCACAGGGG TCACATATCA GATCCTGCAC ATTTTTACAT
  TGACATTTAC ATTATGATTC ATAACAGTAG CAAAATTTGT TACAAAGTAG CAACAAAAAT
  W
  ATTTTATGGT TGGGAGTGAC CACAACATGA GGAACTGTAT TCAAGTGTCA CAGCATTAGG
  AAGGGCCCTG CTTTAGGCTA TGGTTTCCTT CCTAACTCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145777661	ENSMUSSNP6277711	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48401596					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155095805 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420977	regulatory region 420977			1997 bp distal
Rr420978	regulatory region 420978			1660 bp distal
Rr420979	regulatory region 420979			791 bp distal
Rr420980	regulatory region 420980			1976 bp proximal