rs48399666 SNP Detail

Summary

• ID
  rs48399666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:117862610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTTGAG AGGGAATACT
  TCCATATGAC TGTTGTATTA CAAGATCCTT GTATATACAG AGTACAGTTT CAAGGATTTA
  AAGAAAATGA ACTCCATATC TGATCTAAAT GCCAAAATAA AACAAACAAA CAAACAAACA
  AATAGATGAA AGATCTAAGA TTCCACCAGA CTGTCTTTTA ATAATATAGA CATGGATAGC
  Y
  CATCTACTGG AGAGTCTAAA TCCAGTTAGG CTACAGTAGA GACCAGGCAT CTGTAATTTT
  TCTTAGCTCC TCTGGTAACT CCAGTTAGCA AGCACAAGTG GGGGACAATT GGTGTCTGGA
  GAAACCTCAG AGCTGAGTTG ATTTCATATG AAGGGGTCCC TGAAGACTTA GGACACTTCT
  GATCAGCTCC TAATATTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135695961	ENSMUSSNP5411754	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320900836	CHEV_3_117771879	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48399666					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117862610 () rs orientation: forward

Symbol	Name	Function Class
Gm65635	predicted gene, 65635	within coordinates
Rr583881	regulatory region 583881	1197 bp proximal
Rr583882	regulatory region 583882	1471 bp proximal