rs48397660 SNP Detail

Summary

• ID
  rs48397660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:35377199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATATTC CCAAAAGGTA
  ACAGAGCACC AAGTACCGTG TGCACTTTGG GTGTCACCTT CCCCTGTGTT CTGAGGCCAA
  TTAAGTCCCC CAGTTGACAC TTACCAAGTG TCTGATCACC AACATGTGCA GCCTTCAGTC
  TGCCTGAGAC ATCATCTGTC CCTCACCCTT TCCAAGCATG CACTTAAGTT CCAAAGCAAA
  Y
  ACTTTCTTCA ATGTCAGTGC CCATGAGATT TTACTTGTGA TTCTGTGCTG TGAGTGGTTG
  CTAAGAGATG GGAGGAGAGT CACAAACAAA ATAGGAGTGC ATAAGCCTCC AGTGAACACT
  AAAAGTAGGC TGTCAACAAG ACTGTACTTT CCCAAGGATG ATCGCTGTGT ACTGCAATAT
  AAATGCCACT CTACCGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60386896	NES15881312	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48397660					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60386896	NES15881312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:35377199 () rs orientation: forward

Symbol	Name	Function Class
Gm35425	predicted gene, 35425	within coordinates
Rr575230	regulatory region 575230	746 bp distal
Rr575231	regulatory region 575231	571 bp proximal
Rr575232	regulatory region 575232	798 bp proximal
Rr575233	regulatory region 575233	845 bp proximal
Rr575234	regulatory region 575234	950 bp proximal