rs48394263 SNP Detail

Summary

• ID
  rs48394263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102181088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAGCAAA AATGAGCGTT
  CTTCTGTTTG CACTTTTATG GGGTGGTGAG GCCAAGGCAG CATGCCAGGG TATGGCCAGC
  TAGCCAGTGG GATCTGTTGA CAGGGGCCTC AGATGTAGGG CAAGGTAGAA GAGAACGAGG
  CTCAGGAAGC CTCGGAATTT CTGGAACTGT TACTCTTATC TTGTGCCTCT CCTTCCTCAG
  Y
  CCACCATCAA AGTTTGGAAT CAATGACTTG TTTTGAGTTT GCAGGCTAAA GGACTACAGC
  AATCCCACGA AGACAAACCA CACCTTGATC CCACTGCAGA TACGGACTTT GGCCTTTTAC
  GTTGGTGATC CAGACCTTTG GGTCTGATAG GGAGGAGTGA TTGTGCTTTC CACTGTGAGA
  AGGACTCGGG CTTGAGGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135555670	ENSMUSSNP4266210	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss320855287	CHEV_3_102077695	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48394263					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102181088 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	1482 bp proximal
Rr582220	regulatory region 582220	1962 bp proximal