rs48394150 SNP Detail

Summary

• ID
  rs48394150
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5806866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTTCAAC TTCCAGTGGA
  TTTGTGATGT AATTCACAGG GAAGCTGGAG TACCTGTATT CCTGTCCAAT GTGTCTTGCC
  TCAAAAACTA CACATTGGCT ACTTTGATTC AAAATTTTCC TATTAGGATT AGATAACTGT
  TTATTATTTA ACCCTGGATG TCATAAAACT TCATACAGAT AAAGCATTCT AAGAAATTTG
  R
  GAAAATTTTG AAGTTACTAC CTACATTTTA ACTGTTGCTT CTGTAAATAC TTTATAGATG
  GCTAGTGGTC TTCAGAAGTG ATTTCTCAAG TCAGATTTCT ATATCTGCAA AACTCCAGGC
  ATCCCCTGCC TATAATATAC CCCATTGTCT TTACTCTCTA CCCACAGCTG CTGCCACAGC
  ATGGCTCTGC CTCAGTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145955277	ENSMUSSNP143825	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48394150					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5806866 () rs orientation: forward

Symbol	Name	Function Class
Rr588338	regulatory region 588338	930 bp distal
Rr588339	regulatory region 588339	765 bp proximal