rs48393171 SNP Detail

Summary

• ID
  rs48393171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGC CAGATTTTGT TCACATTTAA
  Y
  GTATGAAAAC TTAATGAATT TTAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134617932	ENSMUSSNP5729696	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48393171					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939534 () rs orientation: forward

Symbol	Name	Function Class
Rr374551	regulatory region 374551	1210 bp upstream
Rr397608	regulatory region 397608	within coordinates
Rr573714	regulatory region 573714	within coordinates
Rr573715	regulatory region 573715	91 bp proximal
Rr573716	regulatory region 573716	634 bp proximal
Rr573717	regulatory region 573717	1965 bp proximal
Tssr28465	transcription start site region 28465	1996 bp downstream
Tssr32654	transcription start site region 32654	1937 bp upstream