rs48390708 SNP Detail

Summary

• ID
  rs48390708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27164687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACAGCTC CCACAAGATT
  TTTTTTTCTC TGTTGTAGGG GAGGCTGTAA GGGTGAAAGG CAGGTACGAG AAGAAAAGAG
  TGGGACTAGG GTACAGCCTG AAATTCACAC AGATAAAAGG TCTGACTGAA AATAAAGATG
  CCTGAGTCCT AGAGTTGGCT ATACAACCAT CAGTTATTAT TCTTGGCTTT AGTTTCACAC
  R
  TATTGTTTTA AAGTTTTCTT TCATCCTGAA AGCTTTGTTA ACTCATTTAC AAATGGTCAG
  AATAAATGAA ACAGTATATA CAATAAAATA ATCATACTTA TTTTACTCAG TTAAACAGCC
  TTAAGCTGGT GTGGTAATCC TAACAGGTCT GAGGACTCCC TGGGATTACA TACCAAAGGA
  GACTTCAACA ACAAAATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380579	NES15885326	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48390708					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380579	NES15885326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27164687 () rs orientation: forward

Symbol	Name	Function Class
Ect2	epithelial cell transforming 2	Intron
Gm25152	predicted gene, 25152	1443 bp downstream
Rr574345	regulatory region 574345	1501 bp distal
Rr574346	regulatory region 574346	410 bp proximal
Rr574347	regulatory region 574347	534 bp proximal