rs48390701 SNP Detail

Summary

• ID
  rs48390701
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32586148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCT TGCGTCACAC TGCGGCACAG
  M
  CAGCCTCGAG CAATGCTTCT CTACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146162343	ENSMUSSNP7190869	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss321072244	CHEV_4_32673123	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48390701					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32586148 () rs orientation: forward

Symbol	Name	Function Class
Bach2	BTB and CNC homology, basic leucine zipper transcription factor 2	40 bp downstream
Rr590021	regulatory region 590021	370 bp proximal
Rr590022	regulatory region 590022	640 bp proximal
Rr590023	regulatory region 590023	1185 bp proximal
Rr590024	regulatory region 590024	1509 bp proximal