rs48387370 SNP Detail

Summary

• ID
  rs48387370
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108668526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACAGGTTCAT GTATTGGAGC ACTTGGTCCC CAGATCGTGC
  CTCCGTTTCT CTGTTTGGGG AGATTTAGGA GGTGTGGCCT TGCTGGAGGA AGGGTGTCAC
  K
  GGGGGGGGGG GCAGGCTTTG AGAATTTTAA GACTTGTGTT ATCCCAGGTT CCCTTTTTGT
  TGTTGTTGAT GCTCTGGCTG CAACGTTTGC TGCTTGCAGC C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss135585705	ENSMUSSNP5973470	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48387370					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108668526 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aknad1	AKNA domain containing 1			Intron
				mRNA-UTR
Rr583305	regulatory region 583305			960 bp distal
Rr583306	regulatory region 583306			1240 bp proximal