rs48380835 SNP Detail

Summary

• ID
  rs48380835
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170825676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG GGCTACTATC CATTTTTGTC
  C
  TTATATGGAG ATTTCAGATA TGACA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146150344	ENSMUSSNP5582639	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320115477	CHEV_1_172928238	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48380835					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170825676 () rs orientation: forward

Symbol	Name	Function Class
Rr396544	regulatory region 396544	114 bp downstream
Rr396545	regulatory region 396545	324 bp upstream
Rr423178	regulatory region 423178	1051 bp distal
Rr423179	regulatory region 423179	1134 bp distal
Rr423180	regulatory region 423180	within coordinates
Tssr9941	transcription start site region 9941	458 bp upstream