rs48379737 SNP Detail

Summary

• ID
  rs48379737
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:69763981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCGTAAAA TGACACGATG TGAGAAAATG
  CCCTCCCTAA GGGGAAGAGA GTGATGTCAT GCCTTTGCTG TAAGCTGTTG TTTGTGTTTT
  AGAAGATACA TAGACACTAT CTTCAAAAAA TCATAAACAT GTGTTCTGTT TCTGGTTAAC
  M
  GAAACTTTCA TCTTGTATAA AGACTCTCCA CTTggtgtgg tggcacacct ttaatcttag
  cacttgggag gcagagctct gtgtttgtag ccgtcctggt ctatatacca agtctcagaa
  cagctggggc tacaaaatag agagaaactg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325671473	CHEV_18_69790564	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48379737					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69763981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr540232	regulatory region 540232			170 bp distal
Rr540233	regulatory region 540233			765 bp proximal
Rr540234	regulatory region 540234			1143 bp proximal
Tcf4	transcription factor 4			Intron
				Noncoding-Transcript-Variant