rs48377656 SNP Detail

Summary

• ID
  rs48377656
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151911763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTCCTT AGCAAGACAA
  CTAGAACTCA TCTTTAGAAA CTAGATGTTG ACTATGTAAC ACACCAGGCA AATGTGATCA
  AAATACACGT GTGAAAATGG GAGATAGGTT TTATTAATAT TTTGAACATA TTTAACATAT
  TAGAAATGAC TTTATAATCG TACTATGACT GTATTAAAAT ATTTTTGCAA TAAGGAAAAA
  R
  GAAATATGGT CCTACCTTGA ATTACAAAGC TGATAATAGT TCTGGTAGAC TATAAACTTT
  GTTACCTTAT CAGGATATAG CTCAAATGAT AAGACTACTT GCTTGTATAG GAGGCCCTGG
  TTTTGATTTA TAACATGGCT GGGAATAAAG CTCTTTGACA TTTTAAGGTT TTTGTTCATT
  TAAGCAGATA GTGAACCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136101345	ENSMUSSNP6767436	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321028393	CHEV_3_151869090	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48377656					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151911763 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Gm40180	predicted gene, 40180			560 bp downstream
Rr367578	regulatory region 367578			1927 bp downstream
Rr587489	regulatory region 587489			1842 bp distal
Rr587490	regulatory region 587490			1244 bp distal