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rs48376078 SNP Detail
Summary
  • ID
    rs48376078
  • Variation Type
    SNP
  • Alleles
    T
Genome Location and Flanking Sequence
  • Location
    Chr3:36667877 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTTTT GTTTTGTGTG TATATGAATA
    T
    TGCCTGATGT ATTAATGTGC ATCAC                                      
    
    T = T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
LG/J
SM/J
ss134784846 ENSMUSSNP5763079 ENSEMBL ENSEMBL_Sanger f SNP T
ss320703517 CHEV_3_36512650 CHEVERUD SCREENING_POP f SNP T T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
LG/J
SM/J
rs48376078 SNP T T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:36667877 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Bbs7 Bardet-Biedl syndrome 7 251 bp upstream
Cpgi13088 CpG island 13088 78 bp distal
Rr575383 regulatory region 575383 454 bp distal
Rr575384 regulatory region 575384 within coordinates
Rr575385 regulatory region 575385 279 bp distal
Tssr28874 transcription start site region 28874 242 bp downstream
Tssr33039 transcription start site region 33039 361 bp upstream
Tssr33040 transcription start site region 33040 331 bp upstream
Tssr33041 transcription start site region 33041 299 bp upstream
Tssr33042 transcription start site region 33042 257 bp upstream
Tssr33043 transcription start site region 33043 228 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory