rs48375406 SNP Detail

Summary

• ID
  rs48375406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141446462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCAGAGC TACCCCTAAC
  CCAGTACATC TTATTTTTCT GAAACAAGGT TTCCTATACA GACCAGGCTA GCCTAGATCT
  TCCAGCTCCA CCTCAGCCTG CCTCTCAAGT GCTGGGATTA ACAATGCGAG TCACCATGCT
  CAGCACCCCA ACAAAAACCT GAGACAGGTT CTTACCGCGC AGGCTCAGCT GTCCTGAGAC
  Y
  TGAAATGGAG TCCAGGCTGG CCTTGAACTC TCAGTCTCAA ATATCAAACA AAAACAATCA
  AAACCAAACT AACACTCAAT GTGCAAGTTA TCCCTGGGTT ATGAGGAATA AGTGAGCTGT
  GGCAGTCTTT ATCCTTCTCT GTGTTACAAC CTTTCTAGCA TAGCTATTCA GCATTTACCA
  GAAAGAAAGA AAGAAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147742646	ENSMUSSNP1632035	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48375406					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141446462 () rs orientation: forward

Symbol	Name	Function Class
Ddi2	DNA-damage inducible protein 2	Intron
Rr398662	regulatory region 398662	136 bp upstream
Rr603862	regulatory region 603862	943 bp proximal
Rr603863	regulatory region 603863	1571 bp proximal