rs48375394 SNP Detail

Summary

• ID
  rs48375394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118603246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACTTTCT AGCTCTAGAG CTCGGATGTA TTACTTAACA
  TCTCTGGACC TGCTTCCTGA TCTGAATATG AGAAATGGTA ACGCTAACTC AGCAGGGGGT
  R
  TGGCATTTAA ATGGTTTGAG GCTTGTGAAA CACAACGCCA ACAGCCTACA CATGATTTGG
  ATCGACATAT TTTAGTCCCC CTTAGACAGA GCCATGGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133584459	ENSMUSSNP2100207	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss321925659	CHEV_6_118576303	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48375394					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118603246 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637498	regulatory region 637498			54 bp proximal
Rr637499	regulatory region 637499			158 bp proximal