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rs48374909 SNP Detail
Summary
  • ID
    rs48374909
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:135682150 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTCTGGTAT CTCAGATGGA
    GAGCCTCATG CTCACGAGGG GAACACTTCA GCCCAGCGCT GCTCTCCAGC CTTGTTTTTG
    TTTTGGTTGT TAGTTTTTTG GGTTTTGGGT TTTGTTTTGT TTTGTTTTGT TTTTGAGACA
    AGGTTTCTCT GTGTAGCCCT GGCTGTGCTA GAACTCCCTC TGTAGACCAG GCTGGCCTCG
    R
    ACTCACGGAC ATCCACCTGC CTCTGCCTCC TGAGTGCTGG GATGAAAGGT GTGCTCTGTT
    TTGAGGTATA AGCAGTTCCG AGGGCTGCTT GAGAAAGTAG TGCAAGCCAT CACAGAATTG
    CTCTGCTGCC TCACGTTCCA GAGGTCAGGA GTGTTGGCTG CGTCTGAGGC CTCCAGAGAG
    CCACGTATCC TGTAGTAACT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
ss147554683 ENSMUSSNP7231806 ENSEMBL ENSEMBL_Sanger f SNP A G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
rs48374909 SNP A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:135682150 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hmgcl 3-hydroxy-3-methylglutaryl-Coenzyme A lyase Intron
Noncoding-Transcript-Variant
Rr398602 regulatory region 398602 235 bp downstream
Rr602217 regulatory region 602217 1219 bp distal
Rr602218 regulatory region 602218 132 bp distal
Rr602219 regulatory region 602219 379 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory