rs48374909 SNP Detail

Summary

• ID
  rs48374909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135682150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGGTAT CTCAGATGGA
  GAGCCTCATG CTCACGAGGG GAACACTTCA GCCCAGCGCT GCTCTCCAGC CTTGTTTTTG
  TTTTGGTTGT TAGTTTTTTG GGTTTTGGGT TTTGTTTTGT TTTGTTTTGT TTTTGAGACA
  AGGTTTCTCT GTGTAGCCCT GGCTGTGCTA GAACTCCCTC TGTAGACCAG GCTGGCCTCG
  R
  ACTCACGGAC ATCCACCTGC CTCTGCCTCC TGAGTGCTGG GATGAAAGGT GTGCTCTGTT
  TTGAGGTATA AGCAGTTCCG AGGGCTGCTT GAGAAAGTAG TGCAAGCCAT CACAGAATTG
  CTCTGCTGCC TCACGTTCCA GAGGTCAGGA GTGTTGGCTG CGTCTGAGGC CTCCAGAGAG
  CCACGTATCC TGTAGTAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147554683	ENSMUSSNP7231806	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48374909					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135682150 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hmgcl	3-hydroxy-3-methylglutaryl-Coenzyme A lyase			Intron
				Noncoding-Transcript-Variant
Rr398602	regulatory region 398602			235 bp downstream
Rr602217	regulatory region 602217			1219 bp distal
Rr602218	regulatory region 602218			132 bp distal
Rr602219	regulatory region 602219			379 bp distal