rs48373896 SNP Detail

Summary

• ID
  rs48373896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121518946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AGAGTTGTCA TGGTAATCTG CTGGCTACTG TGATGTTCCA
  TCAAATGGAA ACATTCCATA TGCTAAACTG ATATGACAGG AACTGGCGCG GGGGGGGGGG
  R
  GGTTGTACCT CTGTCCCTTG AGTGCTTACC AAGCACACCT AAGTCCTGGT TTAGATACTC
  AACCCAGCAT AGAATTGTCA CTGTGGTCAC TGTGTTGCTC G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135727524	ENSMUSSNP1085627	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48373896					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121518946 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13760	CpG island 13760			981 bp distal
F3	coagulation factor III, tissue factor			Intron
				Noncoding-Transcript-Variant
Gm43823	predicted gene 43823			1859 bp upstream
Gm64338	predicted gene, 64338			within coordinates
Rr584149	regulatory region 584149			1794 bp distal
Rr584151	regulatory region 584151			1750 bp distal
Rr584152	regulatory region 584152			1578 bp distal
Rr584153	regulatory region 584153			1077 bp distal
Rr584154	regulatory region 584154			1544 bp distal
Tssr31453	transcription start site region 31453			1763 bp downstream
Tssr31454	transcription start site region 31454			1736 bp downstream
Tssr31455	transcription start site region 31455			1712 bp downstream
Tssr31456	transcription start site region 31456			1679 bp downstream
Tssr31457	transcription start site region 31457			471 bp downstream
Tssr35426	transcription start site region 35426			1888 bp upstream