rs48373516 SNP Detail

Summary

• ID
  rs48373516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:21566956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTTTTA TTTTTATTTT
  TTTATTTTTT TAATTAGGTA TTTTCCTCAT TTACATTTCC AATGCTATCC CAAAAGTCCC
  CCATACCTGC CACCCGCAAT TAATTTTAAC TGCAACATGC TATCAGCACT GGCTGTTGGT
  TTGGGGTATA TGCAAACTTG CAAAAGTAGA ATCTACAAGT TAGAAGGAGT AACTATACCT
  Y
  GGAAGAACAG AATGAGGACT GCACAGTGGG TGAGAGAGAA TCATTGCATT GTTTTGTAGA
  TGACATGGTT TGAATTAAAA AGGTACATAT CATGAGAGGG GTTCACGACC TAGGAGATGC
  ATAAATAATG ATTGAAAAGA GCCAAATACA GTCACTATAG TTATTGATCA TTCCCTAAAA
  TCAATCTCCA TCCTCTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
ss62998378	NES17426468	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
rs48373516					SNP	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62998378	NES17426468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:21566956 () rs orientation: forward

Symbol	Name	Function Class
Rr393394	regulatory region 393394	within coordinates