rs48372299 SNP Detail

Summary

• ID
  rs48372299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135623274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATAGCTC AAGACTGGTT
  CTCCTGAGAT AGAATTTTCC TTGCCTTTCT TCACAGTAAT AAACCCCCAA AACTTAGGTG
  GCCTTTTTGG GGGAGTCTAT TTCTATTTAC CCCTGAAACA GATAGCCACT CTAGGCCAAA
  GAAAATTTGC TTCCAGTCCA GCTTAGTGAA TGGGACAAAC TTATTGGTGT TGTCTGTAGG
  R
  ACATGGGTGG CTTGGGCAAT TGTATCATCA AAAAGCCTAC CCCAGCATGG TGACAAGTGC
  TCAAAGCTAG TGACATCGCT GGTGTCCCCA TTAGTTGACA GTCCACCTCC AAGCAGCAGA
  CAGGACGGTT TGCAGGGGTG AAGCAGGAGG GAGGGATGGA GTGTTGGAAC GTCAGGGGAG
  GGTCTAATGA CCCCACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147553212	ENSMUSSNP2968862	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48372299					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135623274 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	Intron
Rr602183	regulatory region 602183	559 bp distal
Rr602184	regulatory region 602184	265 bp distal
Rr602185	regulatory region 602185	8 bp proximal
Rr602186	regulatory region 602186	909 bp proximal
Rr602187	regulatory region 602187	1032 bp proximal
Rr602188	regulatory region 602188	1060 bp proximal
Tssr39650	transcription start site region 39650	768 bp downstream
Tssr39651	transcription start site region 39651	567 bp downstream
Tssr39652	transcription start site region 39652	487 bp downstream