rs48363160 SNP Detail

Summary

• ID
  rs48363160
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178399487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCCTGT GTAGGTTGCC
  CTGAATGGTA TAAGGGTGCA GGTTGAAAAA GCCATGAGGA ACAAGCCAGT AAGCAGCACC
  CCTCCATGGC CTCTGCTCCA CTCCCTGCCT CCAGGTTCCT GCCCTGAGTT CCCTCAGCGA
  TGGACTGTAA TAGTGATGAG TAAGTCACAT AGGCCTTTTA GTGATGCTGC TCTGTCACAG
  W
  AATAGACATC CTGAGACCAT TGGCAACCAT GGCAAGAGAG GAGAAGACGA GTTTGAAAGG
  AGATGGACAT GAAGGGGTCC TGTCAGGACC TAGAGGATGC TCTCTAGTCA GGAGGGATGC
  AGAGAGACGA CAATGTCCAG ACAAGGAGCC CGGGAACAGA AGTGAAGGAA GGGAACAGAA
  TGAAGGAGGT GTGGTGTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148370312	ENSMUSSNP1513427	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss320629017	CHEV_2_178492399	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48363160					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178399487 () rs orientation: forward

Symbol	Name	Function Class
Gm74610	predicted gene, 74610	414 bp downstream
Rr572464	regulatory region 572464	756 bp proximal
Rr572465	regulatory region 572465	851 bp proximal