rs48360579 SNP Detail

Summary

• ID
  rs48360579
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148794982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGTGTGATT TTTATTTTTA ATTTTATTGT TTGGGCTGTG
  TCTAATGACA GCAAACAATT TACTCTCCAG GTTCAAATTT GGTTTTTAGC ATGTTTCTTG
  T
  TTACATAATT ACTAGTGAAA CGTTCCATGT TTAAACTTGA TCTTCTCTTT CTGAAACAAG
  TCTTATTCTT TCTAAGAGTC CTGAGGGCAA TCAGGAAAAG C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136066834	ENSMUSSNP4892245	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs48360579					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148794982 () rs orientation: forward

Symbol	Name	Function Class
Gm30575	predicted gene, 30575	within coordinates
Rr587259	regulatory region 587259	1682 bp distal
Rr587260	regulatory region 587260	1223 bp distal
Rr587261	regulatory region 587261	625 bp distal
Rr587262	regulatory region 587262	77 bp distal
Rr587263	regulatory region 587263	465 bp proximal