rs48356300 SNP Detail

Summary

• ID
  rs48356300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108282538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCCTACA CTGCTGAGGT TGGCAAGATT CTTTCCAGAC
  TCCCGAAACA TAACTAATGC CGGAGAATGA GTGAGAGAGG GCATTGCACA GAAAGGAAGT
  R
  GATAGGCCGG ACTCTGGTCC TGGAAGGCAG ACACTGTTAA CTAGGTGACA GACTGTTTTC
  TGAGCACTTA ACCCTTTACA AACCTCTCTT CCCGACTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133499141	ENSMUSSNP3742099	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48356300					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108282538 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636071	regulatory region 636071	within coordinates
Rr636072	regulatory region 636072	664 bp proximal
Rr636073	regulatory region 636073	1403 bp proximal