rs48354985 SNP Detail

Summary

• ID
  rs48354985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAA TAAATGGCAG GATCCAGACT
  R
  ACACCCCTGA TCCCTGTTGA AGTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60932516	NES16191109	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48354985					SNP	G	G	G	G	G	G	A	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932516	NES16191109	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149526 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1942 bp distal
Rr637288	regulatory region 637288	within coordinates
Rr637289	regulatory region 637289	1301 bp proximal
Rr637290	regulatory region 637290	1486 bp proximal
Rr637291	regulatory region 637291	1537 bp proximal
Tssr58392	transcription start site region 58392	1078 bp downstream
Tssr58393	transcription start site region 58393	1059 bp downstream
Tssr58394	transcription start site region 58394	1019 bp downstream
Tssr58395	transcription start site region 58395	927 bp upstream
Tssr58396	transcription start site region 58396	943 bp upstream
Tssr58397	transcription start site region 58397	981 bp upstream
Tssr58398	transcription start site region 58398	1007 bp upstream
Tssr58399	transcription start site region 58399	1029 bp upstream
Tssr58400	transcription start site region 58400	1057 bp upstream
Tssr58401	transcription start site region 58401	1093 bp upstream
Tssr58402	transcription start site region 58402	1124 bp upstream
Tssr58403	transcription start site region 58403	1142 bp upstream
Tssr58404	transcription start site region 58404	1161 bp upstream
Tssr58405	transcription start site region 58405	1203 bp upstream
Tssr58406	transcription start site region 58406	1233 bp upstream
Tssr58407	transcription start site region 58407	1264 bp upstream
Tssr58408	transcription start site region 58408	1331 bp upstream
Tssr58409	transcription start site region 58409	1353 bp upstream
Tssr58410	transcription start site region 58410	1375 bp upstream
Tssr58411	transcription start site region 58411	1391 bp upstream
Tssr58412	transcription start site region 58412	1418 bp upstream
Tssr58413	transcription start site region 58413	1431 bp upstream
Tssr58414	transcription start site region 58414	1464 bp upstream
Tssr58415	transcription start site region 58415	1479 bp upstream
Tssr58416	transcription start site region 58416	1494 bp upstream
Tssr58417	transcription start site region 58417	1548 bp upstream
Tssr58418	transcription start site region 58418	1581 bp upstream
Tssr58419	transcription start site region 58419	1600 bp upstream
Tssr58420	transcription start site region 58420	1627 bp upstream
Tssr58421	transcription start site region 58421	1646 bp upstream
Tssr58422	transcription start site region 58422	1672 bp upstream
Tssr58423	transcription start site region 58423	1680 bp upstream
Tssr58424	transcription start site region 58424	1742 bp upstream
Tssr58425	transcription start site region 58425	1787 bp upstream
Tssr58426	transcription start site region 58426	1809 bp upstream
Tssr58427	transcription start site region 58427	1836 bp upstream
Tssr58428	transcription start site region 58428	1851 bp upstream
Tssr58429	transcription start site region 58429	1916 bp upstream
Tssr58430	transcription start site region 58430	1961 bp upstream
Tssr62617	transcription start site region 62617	991 bp downstream
Tssr62618	transcription start site region 62618	1013 bp downstream
Tssr62619	transcription start site region 62619	1049 bp downstream
Tssr62620	transcription start site region 62620	1092 bp downstream
Tssr62621	transcription start site region 62621	1158 bp downstream
Tssr62622	transcription start site region 62622	1710 bp downstream
Tssr62623	transcription start site region 62623	1728 bp downstream
Tssr62624	transcription start site region 62624	1843 bp downstream
Tssr62625	transcription start site region 62625	1994 bp downstream