rs48349777 SNP Detail

Summary

• ID
  rs48349777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136008200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCCTTG TGCGTCCTAG
  GGAAGCACTC TGTCAACTGA GTGGCATCCT AGCCCTGGAA GTTTTACCAT GTATTCTTAT
  TTTCTTGTTT TCTGTATATA TGAGCGTTTG CCTGCATGCA TGGCAGTGCA CCAGGTACAT
  ACCTGGTACC CAAGGAACCT GGAGAGGATG TGGGATCCCC TTGAACCAGT TACAGAATAT
  Y
  GTTAGCCACA ATGTGGGTGC TGGGAATCGA ACCCGGGTCC CCTTCAAAAG CAGCAAGTAC
  TCTTAACCAC TGAGCTATCT CTCCAGTGCT CCACTTCCTG AAGTCTTCCT TAGTCATCTC
  ATTGCGGCTA CCAGGCCTGG CTTGTTTGTT AGTCCTCCAT CATCTTTAAC TCAGGACAAT
  GTTACTCAGA GCCTCTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147564424	ENSMUSSNP6052881	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48349777					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136008200 () rs orientation: forward

Symbol	Name	Function Class
Rr602339	regulatory region 602339	1678 bp proximal