rs48348294 SNP Detail

Summary

• ID
  rs48348294
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128783793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTGATG ATTCTCGGCT
  GTGCCAAGCT GACAGTTAAT GCTAGCTAGG ACAGTCAAAT ATGCTAAGGG TAGGGAGTGA
  GACTCAGTTA TTTAAGTTGT TGGTAGCCAT TTACCACTTA TGTGGCTTCA AGACCTGTTT
  CTTTACAACA GTTTAGGGAA TCCATTTGTT CCATCAAGCA ATCTTTCATT TCATTTTCTG
  K
  CCACAATCTG TGAGCATTTT CCAAATGCTC AAGGGAAAAA TAGATTAGGT TGTGGGCTCC
  TCATAGCTGT CTCATGTTTG AATTCCTAAG ACAACCACAG TCTTCAGACA GTTTTGCTTT
  CTGAGGCTAT AAAATGTCTT AGATAATGTG CAAACTCAGC TGTCAGGCTT TGTGCTCTAG
  AGAAATTAAT AGATGTGTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60795388	NES16468491	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	G	T	T	T	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48348294					SNP	T	T	T	T	G	T	G	T	T	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60795388	NES16468491	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128783793 () rs orientation: forward

Symbol	Name	Function Class
Rr372000	regulatory region 372000	519 bp downstream
Rr417836	regulatory region 417836	993 bp proximal