rs48346849 SNP Detail

Summary

• ID
  rs48346849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:159283776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAGTTG ACCTAGTGAA
  TTCATAAAAG TCAAGGAGAT GGCTTAGAAA ATTTGATTTA TAACTACTTA GTCAGGAGTA
  TAGATTACTA TCTATTACTA TGTTTTAATT TCAAAGGACA CCTTTTTTTA TTTTTCTGAG
  AGAGGGTCTC TTTGTGTGGC CTTGGCTGTC TTTAGCTTTG TCTGTAGACC AGGTTGGACT
  Y
  GAACTCACAG AAATCCATCA GCCTCTGCCT CTTGATCATG CCACCACCAC CAGTTTGAGC
  TGACATCTTA AGGAGAGAAA TTTGGGAAGT CTTGTGAGAT AAGAGCCTTA ATTTTAGGAA
  GGGAAGTAGC TTACATTATG GCCAGGTAGA CAATGTTGGA ATCTAAATGA CTACAGGACA
  CCCCCTTTGA TATCTACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148132353	ENSMUSSNP7013537	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48346849					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:159283776 () rs orientation: forward

Symbol	Name	Function Class
Rr568916	regulatory region 568916	1803 bp proximal
Rr568917	regulatory region 568917	1894 bp proximal