rs48345759 SNP Detail

Summary

• ID
  rs48345759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29122085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATCAAAC CAAATACTCA
  AGGCTTTTAT GGATTTAAAG AAAAGGAGTA GTCTTAGGAA AAAGAAATTC CTGCTTCTGG
  CTAAAAAGGC TTAAAACAAG CAATGGTATC TGAACAATAC AAGCTCATGA CTTCAGCTAG
  CAAGAAGATA AGGAATTAGT TTGTACCTAA CCACTTCCTA AAAGCCTCCC TTTGTCTTCA
  R
  TGTTCTTTCC TGTACTTAGT ATCTGATTGC AGTCTAGGTA TTTTTAAAAT GTGTTAATTA
  AAGATACTCT TTGCAAGAGA AGATGAATGC CTTTGCACCC ACAAAAGGTA CTGTTCTTTG
  CATGGGGTAG AAAGAATTTG ACAGAGATGG AGTCATTGTA AGAACAGAAA GGGTAAGGAG
  AACCCAGGGT CAAGTATATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60381975	NES15888715	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48345759					SNP	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60381975	NES15888715	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29122085 () rs orientation: forward

Symbol	Name	Function Class
Rr574657	regulatory region 574657	677 bp proximal