rs48341769 SNP Detail

Summary

• ID
  rs48341769
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48401307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTGTTT CATTTAGCTT
  TGTTTTTTAA CGTTTCCAGC ATTTAGAGGG TGTTGACTCA TGGCCCTCCT CCATTGTCAG
  AGCTGGCCGG TGCTGGCTGA GTCACTGACA CCGGCTCCCC AGCCCTTTTT CCCTTGGAAA
  TACCCACACA ATAATCCAGA ATGGTCTCCC CATTTCAGGA CAGCTGCTTT TCCGTGTAGC
  W
  TCACAAGTCA GGGATTCGAG AAGTTACAAT AGAGACATCT TTCCAGGGAA GGATATTGTT
  CTTCTGAGAC TTTCTTTATG ATCCAGCATA TAGCTGATTT TGGTAGAGAC TCAATATATA
  ACTGAAAAGA ATTCCAATTC AGTCATGGTT TAATGCAATG TTTCATGCCT ATATACCAAT
  CTTCAAGTTG TGTTACATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146277611	ENSMUSSNP422423	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48341769					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48401307 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68641	predicted gene, 68641			within coordinates
Invs	inversin			Intron
				Noncoding-Transcript-Variant
Rr591970	regulatory region 591970			1714 bp proximal
Rr591971	regulatory region 591971			1966 bp proximal