rs48341509 SNP Detail

Summary

• ID
  rs48341509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37711072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAATCTGG GCAGTTTTTA CATCACATTC CACTCTTATG
  GCTTAGAATT CATGTATTAT AGTGCACATA GCCCAAATAT ACGGAGGTAA GTTTAAATTG
  R
  CTTAGATTAT TATTATTATC ATTATTTTAG TTTATCATAA CTTAGCTATC CTCAGGGAAC
  AGCTGACATC TTGTTAAACT GTCCCCTCCT GCCCTAACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134810398	ENSMUSSNP2313512	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320711575	CHEV_3_37555845	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48341509					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37711072 () rs orientation: forward

Symbol	Name	Function Class
Gm46799	predicted gene, 46799	406 bp upstream
Gm65224	predicted gene, 65224	532 bp upstream
Rr575531	regulatory region 575531	1837 bp distal
Rr575532	regulatory region 575532	198 bp distal
Rr575533	regulatory region 575533	57 bp proximal
Tssr28921	transcription start site region 28921	896 bp downstream