rs48340052 SNP Detail

Summary

• ID
  rs48340052
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:133963963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGCCAGAG GCACTGGATG CCCCTGGAGC TGGAGTTAAC
  AGGCCATCCA GTGTAGGTCC TGGGAATCAA ATTCAGGTTA TCTGAAAGAG CATTCTGCTG
  W
  TAACCAGCAA ACCATCTCTC CAGCACCCAA CTTTGCTTCT TCCTGCCTCC TTTCCAGGAT
  GCTCAGCCTC ACCACAACTC AGAAACAATG GAGCCCATG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133768861	ENSMUSSNP3677795	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss321975830	CHEV_6_133937018	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48340052					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:133963963 () rs orientation: forward

Symbol	Name	Function Class
Rr380154	regulatory region 380154	within coordinates
Rr639549	regulatory region 639549	1644 bp distal