rs48327741 SNP Detail

Summary

• ID
  rs48327741
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:67041696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTC ACACAGACAA TCTACTTCTA
  C
  ATCTCATCTG AGTACTAAAG GACAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144529271	ENSMUSSNP207356	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss319760345	CHEV_1_67049111	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48327741					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67041696 () rs orientation: forward

Symbol	Name	Function Class
Lancl1	LanC (bacterial lantibiotic synthetase component C)-like 1	mRNA-UTR
Rr412496	regulatory region 412496	1482 bp distal
Rr412497	regulatory region 412497	within coordinates
Rr412498	regulatory region 412498	1178 bp proximal