rs48323896 SNP Detail

Summary

• ID
  rs48323896
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88711113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGAAAGT TAGAGGCCAT GGAGCTAAAA GCATGCATGA
  AGAGGCTGAA AATATTTCAC TCCACTTGTG AGCTCCTGCC CCCCCTTGCT CACTCAATTC
  C
  TGGGGTGGGA TGGGTGTGGT GGGAGTTGAG TGGGGAAGAG GGCGGGAGAC CTTTAATTTC
  TCAGAAGCCT TTATGGGCAC TACAGCTGGG CAGATACCC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146939701	ENSMUSSNP5448543	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48323896					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88711113 () rs orientation: forward

Symbol	Name	Function Class
Gm13275	predicted gene 13275	1611 bp upstream
Gm13278	predicted gene 13278	778 bp downstream
Rr595087	regulatory region 595087	1316 bp distal
Rr595088	regulatory region 595088	1495 bp distal
Rr595089	regulatory region 595089	1349 bp distal
Rr595090	regulatory region 595090	1007 bp distal
Rr595091	regulatory region 595091	98 bp distal
Rr595092	regulatory region 595092	908 bp proximal
Rr595093	regulatory region 595093	1121 bp proximal
Rr595094	regulatory region 595094	1404 bp proximal
Rr595095	regulatory region 595095	1567 bp proximal
Rr595096	regulatory region 595096	1909 bp proximal