rs48320888 SNP Detail

Summary

• ID
  rs48320888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52170602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGCAAG CCAGAGGACG
  CAGGCCAATC ATCAGCGCCC CTCCACGGCC CCAGCCTCAG CTCCTGCCTC CAGGTTCCTG
  CCTCCAGGTT CCTGCCCTGT GTGAGTTTCT GTCCTGACTC CTTTTGATGA TGAACAGTGA
  TGTAGAAGTG TAAGCCACAG AAACCCACTC CTCCCCCAGC TTGCTTTTTG GTCTTGGTGT
  Y
  TTCATGCCAG CAATAGAAAC CCTAAGGAAG TCAACCTCTA GTGGAGCTTC GTTTTGTATT
  GCAAAGTTTT TCCAAGTTAG AATCTTGTAG AGCTCAAACA TGCAACATAA CTAAAATATC
  CTATTTTGAG TTTGTTGTTG AAACATAAGA TTATTTAAAG TACATATGGC ATCCTTTTTT
  TTTCTTTCCA GGCACACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60410244	NES15916350	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48320888					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410244	NES15916350	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52170602 () rs orientation: forward

Symbol	Name	Function Class
Rr397665	regulatory region 397665	493 bp downstream
Rr576485	regulatory region 576485	141 bp distal
Rr576486	regulatory region 576486	580 bp distal
Rr576487	regulatory region 576487	638 bp proximal
Rr576488	regulatory region 576488	1285 bp proximal