rs48316307 SNP Detail

Summary

• ID
  rs48316307
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150170024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCT TGTGTGTGTA GTACCAGGAG
  W
  GCACAGCAGA GGGCGTCCGA TGCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148046912	ENSMUSSNP5814956	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss321428019	CHEV_4_149459676	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48316307					SNP	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150170024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	1526 bp proximal
Gpr157	G protein-coupled receptor 157	1936 bp upstream
Rr398878	regulatory region 398878	1564 bp upstream
Rr605170	regulatory region 605170	within coordinates
Rr605171	regulatory region 605171	within coordinates
Rr605172	regulatory region 605172	1308 bp proximal
Tssr40369	transcription start site region 40369	1946 bp upstream