rs48309883 SNP Detail

Summary

• ID
  rs48309883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90016575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG ACCAAGGGCC TCTCCTCCCA
  R
  TGATTGTCGA GTTGGCCATC TTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148526602	ENSMUSSNP957369	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325274609	CHEV_16_90219932	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48309883					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90016575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	613 bp proximal
Rr519070	regulatory region 519070	1991 bp distal
Rr519071	regulatory region 519071	1376 bp distal
Rr519072	regulatory region 519072	577 bp proximal
Rr519073	regulatory region 519073	1078 bp proximal
Rr519074	regulatory region 519074	1086 bp proximal
Sod1	superoxide dismutase 1, soluble	1075 bp upstream
Tssr139276	transcription start site region 139276	1 bp downstream
Tssr139277	transcription start site region 139277	847 bp upstream
Tssr139278	transcription start site region 139278	882 bp upstream
Tssr139279	transcription start site region 139279	907 bp upstream
Tssr139280	transcription start site region 139280	933 bp upstream
Tssr139281	transcription start site region 139281	949 bp upstream
Tssr139282	transcription start site region 139282	1021 bp upstream
Tssr139283	transcription start site region 139283	1060 bp upstream