rs48308000 SNP Detail

Summary

• ID
  rs48308000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60670667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTC CCAGTAAAAA GAGAACAGGA
  R
  TTTATGTCAT AAAAATTGAA TTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135220605	ENSMUSSNP4370504	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320787132	CHEV_3_60567168	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48308000					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60670667 () rs orientation: forward

Symbol	Name	Function Class
Gm37035	predicted gene, 37035	within coordinates
Rr577451	regulatory region 577451	68 bp distal
Rr577452	regulatory region 577452	157 bp distal
Rr577453	regulatory region 577453	1998 bp proximal