rs48305509 SNP Detail

Summary

• ID
  rs48305509
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151767059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATAGGCT TAGCACAGCC
  CTGTTTCACA CATACACACA CACAGGGTTA GTGCAGCCCT GTTGTAACAC ACACACACAC
  ACACACACAC ACACACACCT CATACATACT TACTTCAAAA GGAAAATGTC AAGAATAGGG
  AAGGCAGCAA AGATTTTGCT TTCTGCCTAG ATCAGAAACT ATGTATGTGG CTGAGTGTTC
  K
  GTCCTGGTTA TTTCACCTCA AAGTGACTCC ATCGTCCAAA ACGACTCTGG CTTGTGTCAA
  AAGGACATAA AACCATCCAG CAGGACACCA TTTGAAATCA ACAGAAACAA GAACCTCCTG
  ACACGTGAAG TGCTTGAAAA AGGCAGGTCA CCGCGCAGGG TGCTGAGCAT TCAGATTTCG
  ACACGTTCGC ACACGGGCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148075609	ENSMUSSNP2369928	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48305509					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151767059 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Gm38442	predicted gene, 38442			within coordinates
Rr605620	regulatory region 605620			300 bp distal
Rr605621	regulatory region 605621			688 bp proximal