rs48305179 SNP Detail

Summary

• ID
  rs48305179
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134002213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAAATAGC CAGATAGCAT TACGGTTGCG GAGAACTTGA
  AATGATATAC AGTCTTGTAA TCCAATCACG GTCCTTGGCA ACCGCTTCTA GGAGAGAATT
  A
  TTTACTCCAC AAGTGTAAAT ACTTTTCCAG GATGTAGGTC ACTTCACACT CATCACTTAG
  AGAACTGTAC AACTCAAAGT AGCAAGAGAA CTTTCAAGG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147522913	ENSMUSSNP147378	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321346332	CHEV_4_133830817	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48305179					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134002213 () rs orientation: forward

Symbol	Name	Function Class
Gm69734	predicted gene, 69734	within coordinates
Pdik1l	PDLIM1 interacting kinase 1 like	100 bp downstream
Rr398573	regulatory region 398573	1241 bp downstream
Rr601619	regulatory region 601619	1263 bp distal
Rr601620	regulatory region 601620	1423 bp distal
Rr601621	regulatory region 601621	807 bp distal
Rr601622	regulatory region 601622	1231 bp distal