rs48304686 SNP Detail

Summary

• ID
  rs48304686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37709888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCTGGC CTGGAACCCT
  GAAATCCGCC TGCCTTTGCC TCCCAAGTGC TGAGATTAAA GGTGTGTGCC ACAACTGCCC
  AGCAATATTT TTCTTACCTT TTACAATTGT GTCATAAAAG ACAAATTTGA TTCCTTTTTT
  TTTTCTGGCC AAAAGGCTAT TCACTACATT AATAAGTTCG AATTCTAATA TGATATATAG
  Y
  CAACTTAAAA TCATCTTGAT CTTACAAACG TGAACAGAAT CCTAATATCT AATTTCTATT
  ATAGAGAATT TATAATGCAA ATCATTGGTT GCATTAAATG TTTCCAGAGG CGGATACATT
  AAGGATTATG GCAGTAAATT TTATGTACAC CTCACCTGGG ACCCCTCTGT GATACCTGCC
  TGCATAGGCC TGGTCTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134810368	ENSMUSSNP6345854	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48304686					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37709888 () rs orientation: forward

Symbol	Name	Function Class
Gm46799	predicted gene, 46799	within coordinates
Gm65224	predicted gene, 65224	within coordinates
Rr575530	regulatory region 575530	1149 bp distal
Rr575531	regulatory region 575531	653 bp distal
Rr575532	regulatory region 575532	352 bp proximal
Rr575533	regulatory region 575533	1241 bp proximal
Tssr28918	transcription start site region 28918	1308 bp downstream
Tssr28919	transcription start site region 28919	1234 bp downstream
Tssr28920	transcription start site region 28920	961 bp downstream
Tssr28921	transcription start site region 28921	279 bp upstream