rs48304402 SNP Detail

Summary

• ID
  rs48304402
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:144131272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG CTCCTAGGCT CTACTCTCGC
  A
  GCGGGAGGGG TGGGTCTGGC TCTGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147823046	ENSMUSSNP4166513	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321408461	CHEV_4_143994605	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48304402					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144131272 () rs orientation: forward

Symbol	Name	Function Class
Pramel13	PRAME like 13	Intron
Pramel13os	PRAME like 13, opposite strand	within coordinates
Rr604225	regulatory region 604225	within coordinates
Rr604226	regulatory region 604226	177 bp proximal
Tssr40137	transcription start site region 40137	952 bp downstream
Tssr44454	transcription start site region 44454	1062 bp upstream