rs48301238 SNP Detail

Summary

• ID
  rs48301238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146067655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGTGAA CACCATCTGT
  TTGGGGTATT AAATTTAATA ATAGGCAATT ACAATGTTTT CCGTTATTTG TCACTCAGCT
  CTTTGAAGAA GGGTTCTGTT GATCACCCAC AGTATTCTGG AAAGTGCGAT TAAGGAGCAG
  AACCACACTG CACAAACCAG TGTGCTCTGG ATTTTGTGTC ACTCTCCTGC TTTTTTTTTT
  Y
  CCCCTAATGC TCATTAGGGT TCCAAAGAGA CACAAGAGAT TTATGCTGAT CTCCCTAGAA
  GAGCTCTGAT GGGGCAGGCA GGGAACAAGG AATTCAGACG GAAATATGGA GTCTATAAAG
  ATTTTCCTCT GAACCACCCC ATCTGAGCTA CAGGGCAATG TATGGATGTT CGGTGGCAGT
  AGAACTTTTT TTTTTTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147857144	ENSMUSSNP613123	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320541164	CHEV_2_146051471	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48301238					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146067655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12367	CpG island 12367	1746 bp distal
Insm1	insulinoma-associated 1	715 bp downstream
Rr566646	regulatory region 566646	within coordinates
Rr566647	regulatory region 566647	564 bp proximal