rs48300753 SNP Detail

Summary

• ID
  rs48300753
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141170788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCAAGTG CTGGGATTAA
  GGTGTGCATC ACACTCAGCT AAGTCTTTGT TCTTTGAAGA GTTTTCAGTG AAATTATAAA
  TAACAGTTAA TATTCTGCAG TCCTGGCATA GTAATTAAAT ACAAACCCAC CCTGGCTGCC
  AGCCCTGACC TTCTTCATGC CCTTCCCATA TCACTTCCTC CCTGGGAATG GAGCCTGCAT
  W
  CTCAGTCATG CTAGGCTAGT ATTTTACCAC TGACCTACAT CTTTAGTTCT AATCTAATTT
  CCAACCTTCA GGACACTGAA GCCTGAGGTT TCCATACGAT AGGTTGACTG GCCAATAAAT
  CCCTGGGATT ACAGAATGCA CCACTCCTAG ATTTTATTAC TATTATTTAT TTAATGTTTA
  CTTAAATTCT ATGAGTATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737136	ENSMUSSNP5613943	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48300753					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141170788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15230	CpG island 15230	1004 bp proximal
Gm42337	predicted gene, 42337	509 bp downstream
Rr603768	regulatory region 603768	719 bp proximal
Rr603769	regulatory region 603769	1188 bp proximal
Rr603770	regulatory region 603770	1628 bp proximal
Tssr40079	transcription start site region 40079	1180 bp upstream
Tssr44320	transcription start site region 44320	1952 bp downstream
Zbtb17	zinc finger and BTB domain containing 17	1196 bp upstream