rs48297563 SNP Detail

Summary

• ID
  rs48297563
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108203899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCACAAG TTCTTTACAT
  GCTTAAAAAC TTTTGAGAAA CTCCAAACAC CTCCATAGAT ATTAGATATG AGATATGATA
  TATGTTAGCC TATATCTATC ATATTAGAAA ACATTTTTAG AAATTACACA TGAGCATAGT
  AAGATTTTTT TTAATGCTAA AATGATAATG CCCTCTAGAA TAAAACAAAG CAAAATTTAA
  T
  AAGAATGCTG GGTATGATGG AGTATACCTT TAATACCAGC ACTCCAGAAG TAAACAGGTA
  GATCTCTGTT GAGTTTCTGG CCAGTATGCT CTACATAAAC CCCCTCTCCC TTACGTCTCT
  GGTGTTGAGT AGATTTATAA AGCACTTTAA GGCCTAGTTG AATGGAAGAG TCACATAGTG
  CACATCTGCA TTGGTCTCCA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss133497803	ENSMUSSNP513144	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48297563					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108203899 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636058	regulatory region 636058	740 bp proximal